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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
221
total RNA-seq
186
ATAC-seq
186
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
0
Capture-C
Assay category
247
DNA binding
47
DNA methylation
Target of assay
205
histone
205
histone modification
105
broad histone mark
100
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
53
August, 2017
41
May, 2022
September, 2018
31
June, 2019
24
October, 2019
9
November, 2017
6
February, 2021
5
May, 2019
4
August, 2021
Available data
215
bigWig
210
bam
194
bed narrowPeak
100
tagAlign
68
fastq
57
bigBed narrowPeak
41
zippedFastqFolder
21
bed broadPeak
21
bigBed broadPeak
6
tsv
3
bed bed3+
Organism
294
Homo sapiens
Biosample type
934
tissue
487
cell line
294
primary cell
200
in vitro differentiated cells
3
stem cell
Organ
118
epithelium
85
pancreas
23
vasculature
20
blood vessel
17
vein
15
kidney
12
connective tissue
10
musculature of body
9
brain
5
heart
4
liver
3
eye
Project
163
AMP
84
T1D
47
HPAP
Genome assembly (visualization)
215
hg19
175
GRCh38
Lab
130
AMP-T2D consortium
117
Kyle Gaulton, UCSD
47
Klaus Kaestner, Upenn
Audit category:
25
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
September, 2018
BIOSAMPLE
ASSAY
294 results
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ChIP-seq
WGBS
primary cell
monocyte
85
pancreatic alpha cell
13
31
CD8-positive, alpha-beta T cell
33
pancreatic beta cell
13
16
endothelial cell of umbilical vein
17
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