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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
ChIP-seq
367
total RNA-seq
ATAC-seq
180
single cell RNA-seq
56
snATAC-seq
48
WGBS
31
DNase-seq
25
pCHi-C
13
Hi-C
8
RRBS
5
GRO-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
31
DNA accessibility
Date released
21
June, 2019
6
October, 2019
3
August, 2017
2
August, 2021
1
November, 2020
Available data
29
bam
29
bed narrowPeak
29
bigBed narrowPeak
29
bigWig
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
2
fastq
Organism
33
Homo sapiens
Biosample type
tissue
28
primary cell
3
in vitro differentiated cells
2
cell line
Organ
18
epithelium
12
kidney
8
connective tissue
5
brain
5
vasculature
4
blood vessel
2
heart
2
liver
2
vein
1
eye
1
musculature of body
1
pancreas
Project
33
AMP
Genome assembly (visualization)
27
GRCh38
24
hg19
Lab
31
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
assay_title!
ATAC-seq
audit.ERROR.category!
inconsistent ontology term
biosample_type!
tissue
BIOSAMPLE
ASSAY
33 results
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DNase-seq
Capture-C
primary cell
kidney tubule cell
3
cardiac fibroblast
2
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 16 more…
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
cell line
Panc1
1
glomerular visceral epithelial cell
1
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