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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
218
ChIP-seq
152
ATAC-seq
80
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
8
DNA accessibility
Date released
4
June, 2019
2
August, 2021
2
November, 2018
1
August, 2017
1
October, 2019
Available data
8
bam
8
bed narrowPeak
8
bigBed narrowPeak
8
bigWig
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
3
fastq
Organism
10
Homo sapiens
Biosample type
7
tissue
3
cell line
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
21
epithelium
18
ureter
11
connective tissue
11
vasculature
10
pancreas
9
blood vessel
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
10
AMP
Genome assembly (visualization)
8
GRCh38
6
hg19
Lab
10
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
Hi-C
BIOSAMPLE
ASSAY
10 results
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DNase-seq
Capture-C
tissue
body of pancreas
4
pancreas
2
islet of Langerhans
1
cell line
EndoC_BH1
2
Panc1
1
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