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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
481
ChIP-seq
395
ATAC-seq
263
single cell RNA-seq
249
total RNA-seq
87
RNA microarray
84
snATAC-seq
58
WGBS
57
pCHi-C
29
Hi-C
21
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
3
DNA accessibility
Date released
4
August, 2021
2
February, 2023
2
October, 2019
1
August, 2017
Available data
209
bam
209
bed narrowPeak
209
bigBed narrowPeak
bigWig
206
bed bed3+
206
bed broadPeak
206
bigBed broadPeak
12
fastq
Organism
9
Homo sapiens
Biosample type
4
cell line
2
in vitro differentiated cells
2
primary cell
1
tissue
Organ
4
epithelium
2
connective tissue
2
kidney
2
pancreas
1
liver
Project
7
AMP
2
T1D
Genome assembly (visualization)
2
hg19
Lab
5
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
9 results
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Clear Filters
Capture-C
DNase-seq
HiChIP
cell line
EndoC_BH1
2
2
in vitro differentiated cells
adipocyte
1
osteoblast
1
primary cell
kidney glomerular epithelial cell
1
kidney tubule cell
1
tissue
right lobe of liver
1
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