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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1653
ChIP-seq
1510
total RNA-seq
527
ATAC-seq
366
single cell RNA-seq
180
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
55
pCHi-C
31
Hi-C
19
RRBS
14
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
4
DNA accessibility
Date released
84
February, 2021
10
August, 2021
2
December, 2019
1
August, 2017
1
July, 2019
1
November, 2018
1
October, 2019
Available data
84
txt
4
bam
4
bed narrowPeak
4
bigBed narrowPeak
4
bigWig
2
bed bed3+
2
fastq
2
tsv
1
tar
Organism
99
Homo sapiens
Biosample type
90
tissue
7
cell line
2
in vitro differentiated cells
1
primary cell
Organ
84
bone element
5
kidney
4
epithelium
4
pancreas
3
connective tissue
2
liver
1
adipose tissue
1
blood vessel
brain
1
vasculature
1
vein
Project
100
AMP
Genome assembly (visualization)
6
hg19
Lab
93
AMP-T2D consortium
5
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
87
inconsistent ontology term
2
audit script error
organ_slims!
brain
BIOSAMPLE
ASSAY
100 results
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RNA microarray
STARR-seq
Capture-C
FAIRE-seq
tissue
bone element
84
islet of Langerhans
1
kidney
1
kidney interstitium
1
pancreas
1
+ See 2 more…
cell line
EndoC_BH1
2
HEK293T
2
HepG2
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
osteoblast
1
primary cell
endothelial cell of umbilical vein
1
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