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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
331
ATAC-seq
261
single cell RNA-seq
241
ChIP-seq
236
total RNA-seq
87
RNA microarray
84
snATAC-seq
57
WGBS
51
pCHi-C
30
Hi-C
21
RRBS
10
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
0
FAIRE-seq
Assay category
21
DNA methylation
Date released
15
July, 2019
6
August, 2017
2
August, 2021
Available data
19
bed bedMethyl
19
bigBed bedMethyl
6
fastq
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
1
tar
Organism
23
Homo sapiens
Biosample type
11
tissue
10
primary cell
2
cell line
in vitro differentiated cells
Organ
8
epithelium
5
musculature of body
4
kidney
4
pancreas
2
brain
2
heart
2
liver
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
23
AMP
Genome assembly (visualization)
19
hg19
Lab
23
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
biosample_type!
in vitro differentiated cells
files.file_type!
bam
BIOSAMPLE
ASSAY
23 results
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RRBS
Capture-C
tissue
skeletal muscle tissue
4
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
+ See 3 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
cell line
EndoC_BH1
2
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