Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1783
ChIP-seq
1422
total RNA-seq
520
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
75
WGBS
66
snATAC-seq
40
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
5
DNA accessibility
Date released
4
August, 2021
3
February, 2021
2
July, 2019
1
August, 2017
1
November, 2018
1
October, 2019
Available data
5
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
3
tsv
2
bed bed3+
2
fastq
1
tar
Organism
12
Homo sapiens
Biosample type
7
tissue
2
cell line
2
in vitro differentiated cells
1
primary cell
Organ
4
kidney
4
pancreas
3
epithelium
2
connective tissue
1
blood vessel
1
brain
1
vasculature
1
vein
Project
12
AMP
Genome assembly (visualization)
7
hg19
Lab
10
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
award.project!
T1D
BIOSAMPLE
ASSAY
12 results
search-icon
table-tab-icon
Clear Filters
FAIRE-seq
Capture-C
snDrop-seq
tissue
frontal cortex
1
islet of Langerhans
1
kidney
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
+ See 2 more…
cell line
EndoC_BH1
2
in vitro differentiated cells
adipocyte
1
osteoblast
1
primary cell
endothelial cell of umbilical vein
1
See all biosamples
Download