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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1862
ChIP-seq
1527
total RNA-seq
531
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
56
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
5
January, 2018
4
August, 2021
Available data
5
bigWig
5
fastq
2
bed bed3+
Organism
9
Homo sapiens
Biosample type
6
in vitro differentiated cells
2
cell line
1
stem cell
Organ
2
connective tissue
2
epithelium
2
pancreas
1
embryo
Project
9
AMP
Genome assembly (visualization)
5
hg18
2
hg19
Lab
7
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
organ_slims!
large intestine
BIOSAMPLE
ASSAY
9 results
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GRO-seq
Capture-C
in vitro differentiated cells
Posterior foregut
1
adipocyte
1
definitive endodermal cell
1
osteoblast
1
pancreatic endoderm
1
+ See 1 more…
cell line
EndoC_BH1
2
stem cell
hESC
1
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