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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1839
ChIP-seq
503
ATAC-seq
212
DNase-seq
212
total RNA-seq
157
single cell RNA-seq
85
RNA microarray
84
snATAC-seq
69
WGBS
34
Hi-C
26
pCHi-C
21
RRBS
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
157
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
47
September, 2023
40
September, 2020
34
May, 2022
13
February, 2021
12
August, 2021
10
November, 2020
9
April, 2020
3
May, 2023
1
December, 2019
1
February, 2023
1
November, 2018
September, 2018
Available data
tsv
133
fastq
106
bam
106
bigWig
52
zippedFastqFolder
13
txt
7
csv
2
bed bed3+
Organism
171
Homo sapiens
Biosample type
86
primary cell
75
tissue
8
cell line
2
in vitro differentiated cells
Organ
59
kidney
12
pancreas
9
lung
8
epithelium
2
connective tissue
1
heart
1
liver
1
musculature of body
Project
85
HPAP
47
KPMP
30
AMP
9
LungMap
Genome assembly (visualization)
2
hg19
Lab
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
7
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
8
inconsistent ontology term
files.file_type!
tsv
month_released!
September, 2018
BIOSAMPLE
ASSAY
171 results
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single cell RNA-seq
MeRIP-seq
Capture-C
primary cell
Langerhans cell
85
pancreatic cell
1
tissue
kidney
59
lung
9
islet of Langerhans
4
heart
1
liver
1
+ See 1 more…
cell line
EndoC_BH1
6
2
in vitro differentiated cells
adipocyte
1
osteoblast
1
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