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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1812
ChIP-seq
1397
total RNA-seq
488
ATAC-seq
360
single cell RNA-seq
208
DNase-seq
84
snATAC-seq
75
WGBS
48
pCHi-C
29
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
360
Transcription
Target of assay
3
control
Date released
109
August, 2021
49
April, 2018
47
September, 2023
42
July, 2018
40
September, 2020
34
May, 2022
18
February, 2021
9
April, 2020
3
August, 2018
3
December, 2019
3
July, 2019
3
May, 2023
2
June, 2018
1
February, 2023
1
November, 2018
1
September, 2018
Available data
204
tsv
127
fastq
99
bam
99
bigWig
52
zippedFastqFolder
13
txt
8
csv
2
bed bed3+
Organism
364
Homo sapiens
Biosample type
183
tissue
180
primary cell
2
in vitro differentiated cells
Organ
93
heart
75
pancreas
70
epithelium
66
kidney
9
lung
7
connective tissue
6
blood vessel
6
vasculature
3
brain
2
artery
1
adipose tissue
1
liver
1
musculature of body
Project
224
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
101
hg19
99
GRCh38
Lab
211
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
9
audit script error
audit.ERROR.category!
inconsistent ontology term
lab.title!
Stephen Parker, UMich
BIOSAMPLE
ASSAY
365 results
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single cell RNA-seq
RNA microarray
Capture-C
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 17 more…
primary cell
Langerhans cell
85
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic acinar cell
11
pancreatic delta cell
11
+ See 11 more…
in vitro differentiated cells
adipocyte
1
osteoblast
1
See all biosamples
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