Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1828
ChIP-seq
1453
total RNA-seq
454
ATAC-seq
263
single cell RNA-seq
212
DNase-seq
86
RNA microarray
78
snATAC-seq
75
WGBS
57
pCHi-C
31
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
0
Capture-C
Assay category
263
Transcription
Target of assay
3
control
Date released
August, 2021
102
February, 2021
49
April, 2018
48
July, 2018
47
September, 2023
40
September, 2020
34
May, 2022
9
April, 2020
5
December, 2019
3
August, 2018
3
July, 2019
3
June, 2018
3
May, 2023
1
February, 2023
1
November, 2018
1
September, 2018
Available data
134
fastq
115
tsv
106
bam
106
bigWig
89
txt
52
zippedFastqFolder
8
csv
Organism
349
Homo sapiens
Biosample type
187
primary cell
160
tissue
2
in vitro differentiated cells
Organ
84
bone element
80
pancreas
71
epithelium
58
kidney
9
lung
4
connective tissue
3
brain
1
heart
1
liver
1
musculature of body
Project
208
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
106
GRCh38
106
hg19
Lab
205
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
9
Xin Sun, UCSD
3
Katalin Susztak, Upenn
Audit category:
93
inconsistent ontology term
9
audit script error
lab.title!
Stephen Parker, UMich
month_released!
August, 2021
BIOSAMPLE
ASSAY
349 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
RNA microarray
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 14 more…
tissue
bone element
84
kidney
56
lung
9
islet of Langerhans
6
heart
1
+ See 4 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
Download