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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1435
ChIP-seq
1113
total RNA-seq
375
ATAC-seq
246
single cell RNA-seq
172
DNase-seq
87
RNA microarray
73
snATAC-seq
54
pCHi-C
24
WGBS
22
Hi-C
17
RRBS
12
small RNA-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
84
February, 2021
3
August, 2021
2
December, 2019
Available data
84
txt
2
bed bed3+
2
tsv
Organism
88
Homo sapiens
Biosample type
87
tissue
2
in vitro differentiated cells
Organ
84
bone element
3
connective tissue
3
epithelium
2
kidney
pancreas
1
adipose tissue
Project
89
AMP
Genome assembly (visualization)
2
hg19
Lab
87
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
84
inconsistent ontology term
2
audit script error
month_released!
September, 2020
organ_slims!
brain
pancreas
BIOSAMPLE
ASSAY
89 results
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RNA microarray
Capture-C
tissue
bone element
84
kidney interstitium
1
renal glomerulus
1
subcutaneous adipose tissue
1
in vitro differentiated cells
adipocyte
1
osteoblast
1
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