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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1629
ChIP-seq
1405
total RNA-seq
460
ATAC-seq
275
single cell RNA-seq
202
DNase-seq
87
RNA microarray
52
pCHi-C
28
WGBS
26
Hi-C
26
snATAC-seq
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
9
August, 2021
Available data
2
bed bed3+
Organism
9
Homo sapiens
Biosample type
7
cell line
2
in vitro differentiated cells
Organ
2
connective tissue
2
epithelium
2
kidney
2
liver
2
pancreas
Project
9
AMP
Genome assembly (visualization)
2
hg19
Lab
5
Bing Ren, UCSD
2
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
award.project!
HPAP
month_released!
October, 2019
organ_slims!
lung
BIOSAMPLE
ASSAY
9 results
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STARR-seq
Capture-C
cell line
EndoC_BH1
2
HEK293T
2
HepG2
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
osteoblast
1
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