Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
1330
total RNA-seq
471
ATAC-seq
228
single cell RNA-seq
212
DNase-seq
87
RNA microarray
40
pCHi-C
30
Hi-C
28
WGBS
21
RRBS
18
small RNA-seq
10
MeRIP-seq
8
snATAC-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
snDrop-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
whole genome sequencing assay
Assay category
28
DNA methylation
Date released
12
July, 2019
9
August, 2017
7
November, 2018
4
August, 2021
Available data
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
11
fastq
2
bed bed3+
Organism
32
Homo sapiens
Biosample type
27
tissue
3
cell line
2
in vitro differentiated cells
Organ
8
connective tissue
8
heart
6
adipose tissue
6
pancreas
5
liver
2
blood vessel
2
epithelium
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
32
AMP
Genome assembly (visualization)
17
GRCh38
2
hg19
Lab
30
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
32 results
search-icon
table-tab-icon
Clear Filters
WGBS
Capture-C
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
+ See 8 more…
cell line
EndoC_BH1
2
HepG2
1
in vitro differentiated cells
adipocyte
1
osteoblast
1
See all biosamples
Download