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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1862
ChIP-seq
1435
total RNA-seq
482
ATAC-seq
284
single cell RNA-seq
212
DNase-seq
87
RNA microarray
57
pCHi-C
36
snATAC-seq
31
Hi-C
18
small RNA-seq
11
WGBS
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
11
DNA methylation
Date released
7
August, 2017
4
August, 2021
4
July, 2019
Available data
18
bam
17
bed bedMethyl
bigBed bedMethyl
17
bigWig
11
fastq
2
bed bed3+
Organism
15
Homo sapiens
Biosample type
11
tissue
2
cell line
2
in vitro differentiated cells
Organ
6
connective tissue
4
adipose tissue
4
liver
2
epithelium
2
heart
2
pancreas
1
blood vessel
1
vasculature
Project
15
AMP
Genome assembly (visualization)
2
hg19
Lab
Klaus Kaestner, Upenn
13
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
files.file_type!
bigBed bedMethyl
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
15 results
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WGBS
Capture-C
tissue
liver
3
subcutaneous abdominal adipose tissue
3
heart left ventricle
2
adipose tissue
1
aorta
1
+ See 1 more…
cell line
EndoC_BH1
2
in vitro differentiated cells
adipocyte
1
osteoblast
1
See all biosamples
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