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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
481
ChIP-seq
338
ATAC-seq
229
single cell RNA-seq
223
total RNA-seq
87
RNA microarray
62
snATAC-seq
57
pCHi-C
28
Hi-C
21
RRBS
17
WGBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
17
DNA methylation
Date released
May, 2022
7
August, 2017
6
February, 2021
4
August, 2021
4
July, 2019
Available data
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
bigWig
17
fastq
6
tsv
2
bed bed3+
Organism
21
Homo sapiens
Biosample type
11
tissue
6
primary cell
2
cell line
2
in vitro differentiated cells
Organ
8
epithelium
8
pancreas
6
connective tissue
4
adipose tissue
4
liver
2
heart
1
blood vessel
1
vasculature
Project
15
AMP
6
HPAP
Genome assembly (visualization)
2
hg19
Lab
13
AMP-T2D consortium
6
Klaus Kaestner, Upenn
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
files.file_type!
bedpe
bigWig
month_released!
May, 2022
BIOSAMPLE
ASSAY
21 results
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WGBS
Capture-C
tissue
liver
3
subcutaneous abdominal adipose tissue
3
heart left ventricle
2
adipose tissue
1
aorta
1
+ See 1 more…
primary cell
pancreatic alpha cell
6
cell line
EndoC_BH1
2
in vitro differentiated cells
adipocyte
1
osteoblast
1
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