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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1483
total RNA-seq
525
ATAC-seq
366
single cell RNA-seq
194
DNase-seq
87
RNA microarray
84
snATAC-seq
63
WGBS
57
pCHi-C
26
Hi-C
10
MeRIP-seq
6
RRBS
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
63
DNA methylation
Date released
41
May, 2022
July, 2019
9
August, 2017
7
November, 2018
6
February, 2021
4
August, 2021
Available data
41
zippedFastqFolder
17
fastq
9
bam
9
bed bedMethyl
9
bigBed bedMethyl
9
bigWig
6
tsv
2
bed bed3+
Organism
67
Homo sapiens
Biosample type
47
primary cell
15
tissue
3
cell line
2
in vitro differentiated cells
Organ
53
pancreas
49
epithelium
8
connective tissue
6
adipose tissue
4
liver
2
spleen
Project
47
HPAP
20
AMP
Genome assembly (visualization)
9
GRCh38
2
hg19
Lab
47
Klaus Kaestner, Upenn
18
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
month_released!
July, 2019
organ_slims!
ureter
BIOSAMPLE
ASSAY
67 results
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WGBS
Capture-C
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
body of pancreas
2
pancreas
2
+ See 1 more…
cell line
EndoC_BH1
2
HepG2
1
in vitro differentiated cells
adipocyte
1
osteoblast
1
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