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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
878
ChIP-seq
398
total RNA-seq
271
ATAC-seq
189
single cell RNA-seq
48
WGBS
48
snATAC-seq
34
DNase-seq
18
Hi-C
16
pCHi-C
10
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
48
DNA accessibility
Date released
27
February, 2021
21
May, 2022
4
August, 2021
Available data
27
fastq
21
zippedFastqFolder
2
bed bed3+
Organism
52
Homo sapiens
Biosample type
48
primary cell
tissue
2
cell line
2
in vitro differentiated cells
Organ
2
connective tissue
2
epithelium
2
pancreas
Project
48
HPAP
T1D
4
AMP
Genome assembly (visualization)
2
hg19
Lab
48
Klaus Kaestner, Upenn
2
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
27
audit script error
2
inconsistent ontology term
award.project!
T1D
biosample_type!
tissue
BIOSAMPLE
ASSAY
52 results
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snATAC-seq
Capture-C
primary cell
Langerhans cell
48
cell line
EndoC_BH1
2
in vitro differentiated cells
adipocyte
1
osteoblast
1
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