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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
ChIP-seq
95
total RNA-seq
ATAC-seq
6
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
Hi-C
2
HiChIP
2
pCHi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
MPRA
1
STARR-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
96
DNA binding
Target of assay
57
transcription factor
20
histone
20
histone modification
17
control
11
RNA binding protein
10
broad histone mark
10
chromatin remodeller
10
narrow histone mark
Date released
27
December, 2018
18
January, 2019
15
November, 2018
13
November, 2019
13
October, 2019
8
February, 2021
1
March, 2020
1
May, 2021
Available data
96
bam
78
bed narrowPeak
78
bigWig
60
bigBed narrowPeak
60
fastq
8
tagAlign
Organism
96
Homo sapiens
Biosample type
725
tissue
260
primary cell
183
in vitro differentiated cells
96
cell line
3
stem cell
Organ
liver
60
blood
60
bodily fluid
28
pancreas
15
epithelium
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
Project
94
AMP
2
T1D
Genome assembly (visualization)
78
GRCh38
78
hg19
Lab
96
AMP-T2D consortium
Audit category:
15
inconsistent ontology term
1
inconsistent control
assay_title!
ATAC-seq
organ_slims!
kidney
liver
BIOSAMPLE
ASSAY
96 results
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Clear Filters
ChIP-seq
cell line
GM12878
60
EndoC_BH1
15
Panc1
13
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
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