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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
179
ChIP-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
179
DNA binding
Target of assay
139
histone
139
histone modification
71
broad histone mark
68
narrow histone mark
30
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
41
August, 2017
37
May, 2021
32
September, 2018
31
June, 2019
24
October, 2019
9
November, 2017
5
May, 2019
Available data
247
bigWig
242
bam
226
bed narrowPeak
tagAlign
94
fastq
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
3
bed bed3+
Organism
179
Homo sapiens
Biosample type
669
tissue
464
cell line
179
primary cell
158
in vitro differentiated cells
3
stem cell
Organ
88
epithelium
70
pancreas
23
vasculature
20
blood vessel
17
vein
15
kidney
12
connective tissue
10
musculature of body
9
brain
5
heart
3
eye
Project
179
AMP
Genome assembly (visualization)
148
hg19
109
GRCh38
Lab
146
AMP-T2D consortium
33
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_title!
CRISPR genome editing followed by DNA sequencing
CRISPRi RNA-seq
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
179 results
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ChIP-seq
primary cell
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
pancreatic alpha cell
13
pancreatic beta cell
13
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