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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
942
total RNA-seq
258
ATAC-seq
227
ChIP-seq
180
single cell RNA-seq
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
18
WGBS
16
Hi-C
16
small RNA-seq
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
227
DNA binding
Target of assay
histone
504
histone modification
274
narrow histone mark
230
broad histone mark
156
control
71
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
August, 2017
44
October, 2018
43
December, 2017
27
October, 2019
26
May, 2019
23
May, 2020
20
April, 2019
12
November, 2017
10
November, 2018
7
December, 2018
6
September, 2017
5
May, 2024
3
October, 2017
1
January, 2019
Available data
221
bam
111
fastq
70
bed narrowPeak
70
bigWig
65
bigBed narrowPeak
44
tagAlign
2
bed bed3+
Organism
227
Homo sapiens
Biosample type
446
cell line
227
tissue
56
in vitro differentiated cells
27
primary cell
1
stem cell
Organ
70
liver
28
heart
28
pancreas
25
brain
23
adipose tissue
23
connective tissue
19
blood vessel
19
vasculature
17
limb
14
spleen
11
nerve
8
artery
7
kidney
1
musculature of body
Project
227
AMP
Genome assembly (visualization)
72
GRCh38
67
hg19
Lab
222
AMP-T2D consortium
5
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
assay_title!
DNase-seq
month_released!
August, 2017
target.investigated_as!
histone
BIOSAMPLE
ASSAY
227 results
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ChIP-seq
tissue
liver
65
body of pancreas
18
spleen
14
subcutaneous adipose tissue
12
heart left ventricle
11
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