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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
481
total RNA-seq
179
ChIP-seq
DNase-seq
33
ATAC-seq
7
WGBS
5
Hi-C
5
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
RNA microarray
1
RRBS
Assay category
179
DNA binding
Target of assay
127
histone
127
histone modification
78
broad histone mark
52
control
48
narrow histone mark
transcription factor
10
RNA binding protein
2
chromatin remodeller
Date released
83
August, 2017
60
October, 2019
18
October, 2018
11
June, 2019
7
May, 2019
Available data
127
bam
83
bed narrowPeak
83
bigWig
57
bigBed narrowPeak
51
fastq
22
tagAlign
1
bed bed3+
1
bed broadPeak
Organism
179
Homo sapiens
Biosample type
123
tissue
45
in vitro differentiated cells
11
primary cell
Organ
215
brain
214
liver
199
pancreas
120
epithelium
117
heart
113
connective tissue
93
vasculature
91
blood vessel
66
limb
56
adipose tissue
42
kidney
39
musculature of body
35
nerve
29
artery
19
embryo
17
vein
14
spleen
9
blood
9
bodily fluid
4
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
179
AMP
Genome assembly (visualization)
84
hg19
82
GRCh38
Lab
179
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
assay_title!
DNase-seq
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
179 results
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ChIP-seq
tissue
subcutaneous abdominal adipose tissue
36
tibial nerve
35
tibial artery
23
subcutaneous adipose tissue
10
omental fat pad
8
+ See 3 more…
in vitro differentiated cells
adipocyte
45
primary cell
mesenchymal stem cell
7
cardiac fibroblast
4
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