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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
459
ChIP-seq
52
total RNA-seq
2
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
459
DNA binding
Target of assay
345
transcription factor
89
recombinant protein
74
control
64
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
18
broad histone mark
17
narrow histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
60
November, 2018
27
December, 2018
23
October, 2019
18
January, 2019
13
November, 2019
2
February, 2021
1
March, 2020
1
May, 2021
Available data
459
bam
420
fastq
407
bigWig
388
bed narrowPeak
353
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
14
tagAlign
3
tar
Organism
459
Homo sapiens
Biosample type
640
tissue
459
cell line
237
primary cell
146
in vitro differentiated cells
3
stem cell
Organ
359
liver
60
blood
60
bodily fluid
28
pancreas
15
epithelium
10
kidney
6
artery
6
blood vessel
heart
6
vasculature
Project
457
AMP
2
T1D
Genome assembly (visualization)
389
hg19
342
GRCh38
Lab
459
AMP-T2D consortium
Audit category:
25
inconsistent ontology term
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_title!
FAIRE-seq
organ_slims!
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BIOSAMPLE
ASSAY
459 results
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ChIP-seq
cell line
HepG2
359
GM12878
60
EndoC_BH1
15
Panc1
13
RCC 7860 HIF1a re-expression
4
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