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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
148
ChIP-seq
25
ATAC-seq
6
DNase-seq
6
WGBS
5
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
Hi-C
1
RNA microarray
Assay category
148
DNA binding
Target of assay
76
histone
76
histone modification
44
broad histone mark
39
transcription factor
33
control
31
narrow histone mark
9
RNA binding protein
2
chromatin remodeller
Date released
117
August, 2017
23
October, 2018
7
June, 2019
1
October, 2019
Available data
97
bam
90
fastq
72
bigWig
55
bed narrowPeak
22
tagAlign
12
bigBed narrowPeak
11
bed bed3+
1
bed broadPeak
Organism
148
Homo sapiens
Biosample type
74
tissue
67
in vitro differentiated cells
7
primary cell
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
148
AMP
Genome assembly (visualization)
73
hg19
72
GRCh38
Lab
148
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
Hi-C
total RNA-seq
organ_slims!
heart
BIOSAMPLE
ASSAY
148 results
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Clear Filters
ChIP-seq
tissue
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
12
white adipose tissue
12
omental fat pad
11
adipose tissue
2
+ See 1 more…
in vitro differentiated cells
adipocyte
67
primary cell
mesenchymal stem cell
7
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