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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
total RNA-seq
78
ChIP-seq
70
single cell RNA-seq
62
ATAC-seq
47
WGBS
Hi-C
6
RRBS
2
DNase-seq
1
RNA microarray
Assay category
78
DNA binding
Target of assay
52
histone
52
histone modification
28
narrow histone mark
25
control
24
broad histone mark
1
transcription factor
Date released
26
August, 2017
21
September, 2018
14
October, 2019
5
December, 2017
4
August, 2021
3
May, 2021
2
June, 2019
2
November, 2017
1
May, 2019
Available data
114
bam
88
bigWig
84
bed narrowPeak
72
fastq
bigBed narrowPeak
7
tagAlign
6
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
Organism
78
Homo sapiens
Biosample type
70
primary cell
cell line
8
in vitro differentiated cells
Organ
138
connective tissue
137
pancreas
124
brain
115
liver
78
epithelium
67
adipose tissue
64
heart
25
musculature of body
25
vasculature
24
blood vessel
22
embryo
18
kidney
18
limb
11
nerve
8
spleen
7
artery
7
vein
4
gonad
4
ovary
3
eye
1
lymph node
1
pituitary gland
Project
78
AMP
Genome assembly (visualization)
52
hg19
48
GRCh38
Lab
78
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
assay_title!
Hi-C
biosample_type!
cell line
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
78 results
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Clear Filters
ChIP-seq
primary cell
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
epithelial cell of proximal tubule
8
pancreatic acinar cell
8
+ See 6 more…
in vitro differentiated cells
Hepatic endoderm
4
pancreatic PP cell
3
hepatocyte
1
See all biosamples
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