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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
34
ChIP-seq
Hi-C
4
ATAC-seq
2
Capture-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
34
DNA binding
Target of assay
25
histone
25
histone modification
transcription factor
13
narrow histone mark
12
broad histone mark
9
control
2
RNA binding protein
Date released
15
December, 2017
14
August, 2017
3
August, 2021
2
September, 2017
Available data
1093
bam
894
bigWig
856
bed narrowPeak
403
fastq
396
bigBed narrowPeak
389
tagAlign
65
bed broadPeak
34
bed bed3+
30
bigBed broadPeak
1
tagAlign bed3+
Organism
34
Homo sapiens
Biosample type
15
tissue
13
in vitro differentiated cells
3
primary cell
3
stem cell
Organ
14
pancreas
4
liver
3
embryo
3
epithelium
1
connective tissue
Project
34
AMP
Genome assembly (visualization)
34
GRCh38
34
hg19
Lab
34
AMP-T2D consortium
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
Hi-C
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
tissue
islet of Langerhans
14
liver
1
in vitro differentiated cells
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
adipocyte
1
primary cell
hepatocyte
3
stem cell
hESC
3
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