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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
222
ChIP-seq
187
single cell RNA-seq
178
ATAC-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
222
DNA binding
Target of assay
190
histone
190
histone modification
101
broad histone mark
89
narrow histone mark
32
control
Date released
121
May, 2021
39
August, 2017
32
September, 2018
14
October, 2019
8
June, 2019
4
August, 2021
3
November, 2017
1
May, 2019
Available data
247
bigWig
242
bam
226
bed narrowPeak
100
tagAlign
94
fastq
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
3
bed bed3+
Organism
222
Homo sapiens
Biosample type
530
tissue
222
primary cell
184
in vitro differentiated cells
131
cell line
3
stem cell
Organ
70
epithelium
70
pancreas
9
kidney
9
vasculature
8
blood vessel
7
vein
4
liver
3
brain
3
connective tissue
2
heart
2
musculature of body
1
eye
Project
138
AMP
84
T1D
Genome assembly (visualization)
190
hg19
151
GRCh38
Lab
117
Kyle Gaulton, UCSD
105
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
assay_title!
MPRA
files.file_type!
bigBed narrowPeak
lab.title!
Anna Gloyn, Oxford
BIOSAMPLE
ASSAY
222 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
pancreatic alpha cell
13
pancreatic beta cell
13
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