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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
472
total RNA-seq
142
ChIP-seq
22
ATAC-seq
8
DNase-seq
6
WGBS
4
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
Assay category
142
DNA binding
Target of assay
70
histone
70
histone modification
40
broad histone mark
39
transcription factor
33
control
29
narrow histone mark
9
RNA binding protein
2
chromatin remodeller
Date released
117
August, 2017
23
October, 2018
1
June, 2019
1
October, 2019
Available data
91
bam
90
fastq
66
bigWig
49
bed narrowPeak
22
tagAlign
11
bed bed3+
6
bigBed narrowPeak
1
bed broadPeak
Organism
142
Homo sapiens
Biosample type
74
tissue
67
in vitro differentiated cells
1
primary cell
Organ
552
liver
216
brain
203
pancreas
142
connective tissue
130
heart
104
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
36
kidney
35
nerve
34
artery
31
musculature of body
20
spleen
18
embryo
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
142
AMP
Genome assembly (visualization)
67
hg19
66
GRCh38
Lab
142
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
MeRIP-seq
assay_title!!
MeRIP-seq
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
142 results
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Clear Filters
ChIP-seq
tissue
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
12
white adipose tissue
12
omental fat pad
11
adipose tissue
2
+ See 1 more…
in vitro differentiated cells
adipocyte
67
primary cell
cardiac fibroblast
1
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