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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
105
ChIP-seq
2
ATAC-seq
Assay category
105
DNA binding
Target of assay
65
histone
65
histone modification
49
transcription factor
36
broad histone mark
29
narrow histone mark
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
63
November, 2017
37
August, 2017
3
October, 2017
2
October, 2019
Available data
1475
bam
1284
bigWig
1220
bed narrowPeak
768
fastq
708
bigBed narrowPeak
398
tagAlign
105
bed broadPeak
70
bigBed broadPeak
51
bed bed3+
2
tar
1
tagAlign bed3+
Organism
99
Homo sapiens
Biosample type
54
cell line
35
tissue
16
primary cell
Organ
54
liver
13
musculature of body
12
brain
12
pancreas
4
epithelium
4
vasculature
3
blood vessel
2
vein
1
adipose tissue
1
connective tissue
Project
105
AMP
Genome assembly (visualization)
105
hg19
69
GRCh38
Lab
105
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
assay_title!
MeRIP-seq
lab.title!
Xin Sun, UCSD
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
105 results
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ChIP-seq
cell line
HepG2
54
tissue
skeletal muscle tissue
13
islet of Langerhans
6
pancreas
6
brain
3
cingulate gyrus
2
+ See 4 more…
primary cell
skeletal muscle myoblast
11
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
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