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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
203
DNA binding
Target of assay
175
histone
175
histone modification
115
narrow histone mark
60
broad histone mark
25
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
84
October, 2019
28
May, 2019
October, 2017
Available data
188
bam
166
bigWig
164
bed narrowPeak
104
tagAlign
88
bigBed narrowPeak
12
bed broadPeak
9
fastq
6
bigBed broadPeak
1
tagAlign bed3+
Organism
203
Homo sapiens
Biosample type
194
tissue
9
primary cell
Organ
552
liver
218
pancreas
203
brain
153
connective tissue
134
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
203
AMP
Genome assembly (visualization)
165
GRCh38
117
hg19
Lab
203
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
RRBS
month_released!
October, 2017
BIOSAMPLE
ASSAY
203 results
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ChIP-seq
tissue
layer of hippocampus
23
substantia nigra
16
angular gyrus
15
caudate nucleus
15
temporal lobe
15
+ See 63 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
See all biosamples
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