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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
254
ChIP-seq
245
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
WGBS
25
DNase-seq
17
pCHi-C
9
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
254
DNA binding
Target of assay
218
histone
218
histone modification
112
broad histone mark
106
narrow histone mark
28
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
51
August, 2017
32
September, 2018
31
June, 2019
7
October, 2019
5
May, 2019
4
August, 2021
3
November, 2017
Available data
227
bigWig
217
bam
210
bed narrowPeak
99
tagAlign
86
fastq
41
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
3
bed bed3+
Organism
254
Homo sapiens
Biosample type
833
tissue
478
cell line
254
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
92
epithelium
70
pancreas
vasculature
20
blood vessel
17
vein
15
kidney
12
connective tissue
10
musculature of body
9
brain
5
heart
4
liver
3
eye
Project
170
AMP
84
T1D
Genome assembly (visualization)
227
hg19
191
GRCh38
Lab
137
AMP-T2D consortium
117
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
inconsistent assembly
1
inconsistent control run_type
assay_title!
WGBS
audit.WARNING.category!
inconsistent assembly
organ_slims!
vasculature
BIOSAMPLE
ASSAY
254 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
pancreatic alpha cell
13
pancreatic beta cell
13
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