Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
466
ChIP-seq
96
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
466
DNA binding
Target of assay
350
transcription factor
89
recombinant protein
76
control
64
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
18
broad histone mark
17
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
60
November, 2018
27
December, 2018
23
October, 2019
August, 2021
18
January, 2019
13
November, 2019
8
February, 2021
1
March, 2020
1
May, 2021
Available data
465
bam
420
fastq
397
bigWig
378
bed narrowPeak
353
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
Organism
466
Homo sapiens
Biosample type
907
tissue
466
cell line
275
primary cell
177
in vitro differentiated cells
3
stem cell
Organ
360
liver
60
blood
60
bodily fluid
28
pancreas
15
epithelium
10
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
Project
464
AMP
2
T1D
Genome assembly (visualization)
393
hg19
346
GRCh38
Lab
466
AMP-T2D consortium
Audit category:
25
inconsistent ontology term
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_title!
WGBS
month_released!
August, 2021
BIOSAMPLE
ASSAY
466 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2
360
GM12878
60
EndoC_BH1
15
Panc1
13
smooth muscle cell of the coronary artery
6
+ See 4 more…
See all biosamples
Download