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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
264
ChIP-seq
241
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
WGBS
19
DNase-seq
17
pCHi-C
10
Hi-C
7
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
264
DNA binding
Target of assay
227
histone
227
histone modification
117
broad histone mark
110
narrow histone mark
29
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
53
August, 2017
32
September, 2018
28
June, 2019
17
October, 2019
9
November, 2017
4
August, 2021
Available data
235
bigWig
227
bam
214
bed narrowPeak
100
tagAlign
94
fastq
51
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
3
bed bed3+
Organism
264
Homo sapiens
Biosample type
877
tissue
472
cell line
264
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
92
epithelium
70
pancreas
23
vasculature
20
blood vessel
17
vein
kidney
12
connective tissue
10
musculature of body
9
brain
5
heart
4
liver
3
eye
Project
180
AMP
84
T1D
Genome assembly (visualization)
235
hg19
195
GRCh38
Lab
147
AMP-T2D consortium
117
Kyle Gaulton, UCSD
Audit category:
19
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
WGBS
organ_slims!
kidney
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
264 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
skeletal muscle myoblast
15
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