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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
215
ChIP-seq
152
ATAC-seq
80
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
215
DNA binding
Target of assay
150
histone
150
histone modification
78
broad histone mark
72
narrow histone mark
47
control
18
transcription factor
9
RNA binding protein
Date released
94
August, 2017
51
October, 2018
32
September, 2018
13
November, 2019
13
October, 2019
6
September, 2017
3
March, 2020
2
May, 2019
1
May, 2021
Available data
195
bam
159
bigWig
147
fastq
138
bed narrowPeak
59
bigBed narrowPeak
21
bed bed3+
16
tagAlign
12
bed broadPeak
Organism
208
Homo sapiens
Biosample type
117
tissue
70
primary cell
28
cell line
in vitro differentiated cells
Organ
537
liver
218
brain
215
pancreas
134
heart
107
epithelium
102
vasculature
99
blood vessel
86
connective tissue
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
211
AMP
4
T1D
Genome assembly (visualization)
161
hg19
155
GRCh38
Lab
215
AMP-T2D consortium
Audit category:
15
inconsistent ontology term
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
assay_title!
total RNA-seq
biosample_type!
in vitro differentiated cells
organ_slims!
pericardium
BIOSAMPLE
ASSAY
215 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
50
body of pancreas
35
endocrine pancreas
16
pancreas
16
primary cell
pancreatic endocrine cell
23
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
pancreatic acinar cell
8
cell line
EndoC_BH1
15
Panc1
13
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