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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
ChIP-seq
246
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
30
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
269
DNA binding
30
DNA accessibility
Target of assay
229
histone
229
histone modification
118
broad histone mark
111
narrow histone mark
30
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
55
August, 2017
44
June, 2019
32
September, 2018
28
October, 2019
9
November, 2017
5
May, 2019
4
August, 2021
1
November, 2020
Available data
267
bigWig
260
bam
246
bed narrowPeak
100
tagAlign
95
fastq
77
bigBed narrowPeak
48
bed broadPeak
48
bigBed broadPeak
29
bed bed3+
Organism
299
Homo sapiens
Biosample type
1024
tissue
486
cell line
299
primary cell
199
in vitro differentiated cells
3
stem cell
Organ
110
epithelium
70
pancreas
29
vasculature
27
kidney
24
blood vessel
19
vein
18
connective tissue
14
brain
musculature of body
8
heart
6
liver
4
eye
Project
215
AMP
84
T1D
Genome assembly (visualization)
260
hg19
225
GRCh38
Lab
182
AMP-T2D consortium
117
Kyle Gaulton, UCSD
Audit category:
20
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
musculature of body
thymus
BIOSAMPLE
ASSAY
299 results
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ChIP-seq
DNase-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
2
skeletal muscle myoblast
15
2
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