Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
32
DNA accessibility
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
84
October, 2019
30
June, 2019
28
May, 2019
15
October, 2017
2
November, 2018
Available data
228
bam
204
bigWig
202
bed narrowPeak
126
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
20
fastq
1
tagAlign bed3+
Organism
250
Homo sapiens
Biosample type
236
tissue
14
primary cell
Organ
558
liver
250
brain
226
pancreas
164
heart
162
connective tissue
148
epithelium
133
kidney
113
vasculature
108
blood vessel
102
limb
75
adipose tissue
72
musculature of body
60
blood
60
bodily fluid
38
artery
37
nerve
22
embryo
21
spleen
19
vein
18
ureter
9
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
250
AMP
Genome assembly (visualization)
203
GRCh38
145
hg19
Lab
250
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
250 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
tissue
brain
20
14
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
angular gyrus
15
+ See 70 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
Download