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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
481
ChIP-seq
113
total RNA-seq
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
0
FAIRE-seq
Assay category
481
DNA binding
Target of assay
358
transcription factor
89
recombinant protein
83
control
64
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
312
November, 2017
60
November, 2018
27
December, 2018
23
October, 2019
18
August, 2021
18
January, 2019
13
November, 2019
8
February, 2021
6
November, 2020
1
March, 2020
1
May, 2021
Available data
465
bam
420
fastq
411
bigWig
392
bed narrowPeak
353
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
tar
Organism
487
Homo sapiens
Biosample type
915
tissue
487
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
375
liver
60
blood
60
bodily fluid
34
pancreas
21
epithelium
10
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
Project
485
AMP
2
T1D
Genome assembly (visualization)
404
hg19
346
GRCh38
Lab
463
AMP-T2D consortium
18
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
31
inconsistent ontology term
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_title!
ATAC-seq
files.file_type!
tar
BIOSAMPLE
ASSAY
487 results
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ChIP-seq
MeRIP-seq
cell line
HepG2
375
GM12878
60
EndoC_BH1
15
6
Panc1
13
smooth muscle cell of the coronary artery
6
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