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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
43
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
43
DNA binding
3
3D chromatin structure
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
404
November, 2017
296
August, 2017
247
October, 2019
165
May, 2021
120
May, 2019
94
December, 2017
80
April, 2019
74
October, 2018
67
November, 2018
50
May, 2020
46
August, 2021
40
May, 2024
35
December, 2018
32
September, 2018
31
June, 2019
25
January, 2019
24
February, 2018
15
November, 2019
15
October, 2017
13
March, 2020
8
February, 2021
8
July, 2019
6
September, 2017
3
October, 2022
1
March, 2019
1
March, 2023
Available data
30
bed narrowPeak
30
bigWig
24
bam
24
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
Organism
46
Homo sapiens
Biosample type
21
in vitro differentiated cells
19
cell line
4
primary cell
2
tissue
Organ
23
liver
4
epithelium
1
kidney
1
pancreas
Project
46
AMP
Genome assembly (visualization)
31
hg19
16
GRCh38
Lab
25
AMP-T2D consortium
20
Bing Ren, UCSD
1
Katalin Susztak, Upenn
assay_title!
WGBS
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
46 results
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Clear Filters
ChIP-seq
Hi-C
in vitro differentiated cells
neural progenitor cell
21
cell line
HepG2
18
1
primary cell
hepatocyte
4
tissue
islet of Langerhans
1
kidney
1
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