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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
93
single cell RNA-seq
72
total RNA-seq
48
ATAC-seq
31
DNase-seq
10
WGBS
4
pCHi-C
3
Hi-C
2
RRBS
1
small RNA-seq
Assay category
154
DNA binding
3
3D chromatin structure
2
DNA methylation
Target of assay
103
histone
103
histone modification
61
broad histone mark
42
narrow histone mark
28
control
23
transcription factor
11
RNA binding protein
3
other context
3
other post-translational modification
Date released
57
April, 2019
40
May, 2024
21
May, 2019
7
December, 2018
7
January, 2019
6
February, 2021
6
November, 2018
6
October, 2019
5
June, 2019
2
July, 2019
2
March, 2020
Available data
126
bed narrowPeak
126
bigWig
113
bam
76
bigBed narrowPeak
20
fastq
6
tagAlign
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
Organism
159
Homo sapiens
Biosample type
147
tissue
6
cell line
6
primary cell
Organ
558
liver
229
pancreas
223
brain
155
connective tissue
143
epithelium
139
heart
108
vasculature
104
blood vessel
73
adipose tissue
70
limb
60
blood
60
bodily fluid
57
kidney
50
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
19
vein
6
eye
4
gonad
4
ovary
1
lymph node
1
pericardium
1
pituitary gland
Project
159
AMP
Genome assembly (visualization)
125
GRCh38
91
hg19
Lab
119
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
BIOSAMPLE
ASSAY
159 results
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Clear Filters
ChIP-seq
Hi-C
RRBS
tissue
left cardiac atrium
40
heart left ventricle
35
1
1
spleen
20
heart
14
1
heart right ventricle
13
1
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
6
primary cell
cardiac fibroblast
5
1
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