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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
93
single cell RNA-seq
72
total RNA-seq
47
ATAC-seq
29
DNase-seq
8
WGBS
4
pCHi-C
3
Hi-C
1
RRBS
1
small RNA-seq
Assay category
134
DNA binding
3
3D chromatin structure
Target of assay
99
histone
99
histone modification
57
broad histone mark
42
narrow histone mark
19
control
16
transcription factor
10
RNA binding protein
Date released
57
April, 2019
40
May, 2024
21
May, 2019
10
October, 2019
6
February, 2021
2
March, 2020
1
June, 2019
Available data
111
bed narrowPeak
111
bigWig
89
bam
61
bigBed narrowPeak
6
tagAlign
3
bedpe bed3+
3
hic
Organism
137
Homo sapiens
Biosample type
130
tissue
6
cell line
1
primary cell
Organ
556
liver
219
brain
211
pancreas
143
connective tissue
133
heart
111
epithelium
107
vasculature
104
blood vessel
73
adipose tissue
70
limb
60
blood
60
bodily fluid
37
kidney
37
musculature of body
35
nerve
34
artery
20
spleen
19
vein
18
embryo
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
137
AMP
Genome assembly (visualization)
110
GRCh38
74
hg19
Lab
97
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
137 results
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ChIP-seq
Hi-C
tissue
left cardiac atrium
40
heart left ventricle
35
1
heart
14
1
heart right ventricle
13
1
right atrium auricular region
10
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
6
primary cell
cardiac fibroblast
1
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