Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
DNase-seq
75
ATAC-seq
64
single cell RNA-seq
57
total RNA-seq
36
ChIP-seq
6
snATAC-seq
3
RRBS
3
snDrop-seq
2
RNA microarray
2
STARR-seq
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
36
DNA binding
1
3D chromatin structure
Target of assay
28
histone
28
histone modification
15
broad histone mark
13
narrow histone mark
7
control
1
RNA binding protein
1
transcription factor
Date released
23
April, 2019
11
October, 2019
2
May, 2019
1
August, 2021
Available data
36
bam
28
bed narrowPeak
28
bigWig
20
bigBed narrowPeak
1
hic
Organism
37
Homo sapiens
Biosample type
28
tissue
9
primary cell
Organ
556
liver
219
brain
211
pancreas
143
connective tissue
133
heart
111
epithelium
107
vasculature
104
blood vessel
73
adipose tissue
70
limb
60
blood
60
bodily fluid
37
kidney
37
musculature of body
35
nerve
34
artery
20
spleen
19
vein
18
embryo
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
37
AMP
Genome assembly (visualization)
29
hg19
28
GRCh38
Lab
36
AMP-T2D consortium
1
Katalin Susztak, Upenn
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
organ_slims!
thymus
BIOSAMPLE
ASSAY
37 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
Hi-C
tissue
kidney
27
1
primary cell
epithelial cell of proximal tubule
7
kidney epithelial cell
2
Download