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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
22
Hi-C
19
RRBS
11
ChIP-seq
4
pCHi-C
2
Capture-C
1
snATAC-seq
1
total RNA-seq
0
HiChIP
0
MeRIP-seq
Assay category
11
DNA binding
Target of assay
9
control
2
histone
2
histone modification
2
narrow histone mark
Date released
5
December, 2017
2
August, 2017
2
October, 2019
2
September, 2017
Available data
bigWig
1234
bam
1228
bed narrowPeak
745
bigBed narrowPeak
704
fastq
238
tagAlign
114
bed broadPeak
79
bigBed broadPeak
53
bed bed3+
3
tar
1
tagAlign bed3+
Organism
11
Homo sapiens
Biosample type
5
in vitro differentiated cells
5
tissue
1
stem cell
Organ
2
brain
2
pancreas
1
connective tissue
1
embryo
1
liver
Project
11
AMP
Genome assembly (visualization)
12
GRCh38
11
hg19
Lab
11
AMP-T2D consortium
assay_title!
ATAC-seq
files.file_type!
bigWig
BIOSAMPLE
ASSAY
11 results
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ChIP-seq
in vitro differentiated cells
Posterior foregut
1
adipocyte
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
tissue
islet of Langerhans
2
dorsal plus ventral thalamus
1
liver
1
planum polare
1
stem cell
hESC
1
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