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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
682
ChIP-seq
249
total RNA-seq
ATAC-seq
11
pCHi-C
8
Hi-C
6
MeRIP-seq
5
STARR-seq
4
Capture-C
4
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
2
HiChIP
2
single cell RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
682
DNA binding
Target of assay
410
transcription factor
150
histone
150
histone modification
120
control
89
recombinant protein
76
RNA binding protein
75
broad histone mark
74
narrow histone mark
33
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
315
November, 2017
67
August, 2017
60
November, 2018
44
May, 2021
43
December, 2017
39
August, 2021
27
December, 2018
24
February, 2018
23
October, 2019
18
January, 2019
13
November, 2019
8
February, 2021
6
November, 2020
1
March, 2020
Available data
611
bam
540
fastq
526
bigWig
502
bed narrowPeak
367
bigBed narrowPeak
60
tagAlign
58
bed broadPeak
58
bigBed broadPeak
19
bed bed3+
3
tar
Organism
688
Homo sapiens
Biosample type
911
tissue
490
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
393
liver
67
connective tissue
60
blood
60
bodily fluid
43
epithelium
37
pancreas
22
embryo
10
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
Project
686
AMP
2
T1D
Genome assembly (visualization)
526
hg19
466
GRCh38
Lab
627
AMP-T2D consortium
37
Kyle Gaulton, UCSD
18
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
38
inconsistent ontology term
1
inconsistent control
Audit category:
19
missing controlled_by
Audit category:
43
inconsistent control read length
8
inconsistent control run_type
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
688 results
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Clear Filters
ChIP-seq
MeRIP-seq
cell line
HepG2
378
GM12878
60
EndoC_BH1
15
6
Panc1
13
smooth muscle cell of the coronary artery
6
+ See 4 more…
in vitro differentiated cells
adipocyte
67
embryonic stem cell
40
neural progenitor cell
21
pancreatic endoderm
18
hepatocyte
15
+ See 8 more…
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