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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
907
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
907
DNA binding
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
195
October, 2019
176
August, 2017
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
40
May, 2024
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
4
November, 2020
3
February, 2021
2
March, 2020
Available data
722
bam
615
bigWig
595
bed narrowPeak
377
bigBed narrowPeak
238
tagAlign
220
fastq
35
bed broadPeak
28
bed bed3+
3
tsv
1
tagAlign bed3+
Organism
907
Homo sapiens
Biosample type
914
tissue
490
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
209
brain
155
liver
123
heart
121
pancreas
74
connective tissue
73
adipose tissue
73
blood vessel
73
vasculature
66
limb
35
nerve
30
kidney
29
musculature of body
28
artery
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
912
AMP
2
T1D
Genome assembly (visualization)
590
GRCh38
529
hg19
Lab
870
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
FAIRE-seq
STARR-seq
BIOSAMPLE
ASSAY
914 results
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ChIP-seq
MeRIP-seq
snDrop-seq
tissue
liver
145
islet of Langerhans
71
4
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
body of pancreas
35
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