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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
FAIRE-seq
Assay category
212
DNA binding
2
DNA methylation
Target of assay
184
histone
184
histone modification
114
narrow histone mark
70
broad histone mark
28
control
Date released
85
November, 2017
84
October, 2019
28
May, 2019
15
October, 2017
2
July, 2019
Available data
196
bam
172
bigWig
170
bed narrowPeak
118
tagAlign
94
bigBed narrowPeak
18
fastq
15
bed broadPeak
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
214
Homo sapiens
Biosample type
210
tissue
4
primary cell
Organ
496
liver
220
pancreas
214
brain
154
connective tissue
136
heart
129
epithelium
97
vasculature
95
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
56
kidney
44
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
15
vein
6
eye
4
gonad
4
ovary
1
lymph node
1
pericardium
1
pituitary gland
Project
214
AMP
Genome assembly (visualization)
165
GRCh38
119
hg19
Lab
214
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
FAIRE-seq
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
214 results
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Clear Filters
ChIP-seq
RRBS
tissue
layer of hippocampus
23
brain
20
1
substantia nigra
16
angular gyrus
15
caudate nucleus
15
+ See 63 more…
primary cell
choroid plexus epithelial cell
1
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
See all biosamples
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