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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
223
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
223
DNA binding
6
DNA methylation
Target of assay
185
histone modification
184
histone
103
broad histone mark
80
narrow histone mark
transcription factor
38
control
8
RNA binding protein
3
chromatin remodeller
Date released
229
August, 2017
211
October, 2019
158
November, 2017
146
May, 2021
111
May, 2019
74
April, 2019
59
October, 2018
50
May, 2020
35
December, 2017
35
May, 2024
28
August, 2021
24
February, 2018
23
June, 2019
15
October, 2017
11
January, 2019
11
September, 2018
9
July, 2019
6
December, 2018
6
November, 2018
6
September, 2017
3
February, 2021
2
March, 2020
Available data
112
fastq
110
bigWig
108
bam
94
bed narrowPeak
85
tagAlign
37
bed broadPeak
30
bigBed narrowPeak
14
bed bed3+
11
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
222
Homo sapiens
Biosample type
158
tissue
45
in vitro differentiated cells
26
primary cell
Organ
87
pancreas
83
connective tissue
45
liver
38
adipose tissue
epithelium
26
musculature of body
Project
229
AMP
Genome assembly (visualization)
116
hg19
91
GRCh38
Lab
229
AMP-T2D consortium
Audit category:
16
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
epithelium
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
229 results
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Clear Filters
ChIP-seq
RRBS
tissue
liver
44
1
subcutaneous abdominal adipose tissue
36
islet of Langerhans
35
skeletal muscle tissue
22
4
pancreas
14
+ See 1 more…
in vitro differentiated cells
adipocyte
45
primary cell
skeletal muscle myoblast
13
1
pancreatic endocrine cell
12
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