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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
349
ChIP-seq
104
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
0
STARR-seq
Assay category
349
DNA binding
Target of assay
309
transcription factor
88
recombinant protein
58
RNA binding protein
34
histone
34
histone modification
28
chromatin remodeller
17
broad histone mark
17
narrow histone mark
2
other context
2
other post-translational modification
1
control
Date released
217
November, 2017
56
November, 2018
27
December, 2018
15
January, 2019
13
October, 2019
11
November, 2019
5
February, 2021
3
December, 2017
1
March, 2020
1
May, 2021
Available data
349
bam
348
bed narrowPeak
348
bigWig
321
bigBed narrowPeak
318
fastq
44
bed broadPeak
44
bigBed broadPeak
14
tagAlign
3
bed bed3+
Organism
349
Homo sapiens
Biosample type
590
tissue
346
cell line
207
primary cell
120
in vitro differentiated cells
3
stem cell
Organ
261
liver
54
blood
54
bodily fluid
19
pancreas
13
epithelium
7
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
Project
347
AMP
2
T1D
Genome assembly (visualization)
410
hg19
349
GRCh38
Lab
349
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
1
inconsistent control
Audit category:
5
missing controlled_by
Audit category:
24
inconsistent control read length
6
inconsistent control run_type
assay_title!
MPRA
BIOSAMPLE
ASSAY
349 results
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Clear Filters
ChIP-seq
cell line
HepG2
261
GM12878
54
EndoC_BH1
13
Panc1
6
smooth muscle cell of the coronary artery
4
+ See 4 more…
stem cell
hESC
3
See all biosamples
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