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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
615
ChIP-seq
240
total RNA-seq
54
ATAC-seq
10
pCHi-C
8
Hi-C
6
MeRIP-seq
5
STARR-seq
4
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
2
single cell RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
615
DNA binding
Target of assay
388
transcription factor
113
histone
113
histone modification
109
control
89
recombinant protein
72
RNA binding protein
58
narrow histone mark
55
broad histone mark
31
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
60
November, 2018
44
August, 2021
44
May, 2021
43
December, 2017
27
December, 2018
24
February, 2018
23
October, 2019
18
January, 2019
13
November, 2019
8
February, 2021
1
March, 2020
Available data
558
bam
487
fastq
479
bigWig
460
bed narrowPeak
367
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
46
tagAlign
12
bed bed3+
3
tar
Organism
620
Homo sapiens
Biosample type
833
tissue
489
cell line
267
primary cell
131
in vitro differentiated cells
3
stem cell
Organ
395
liver
connective tissue
60
blood
60
bodily fluid
37
epithelium
31
pancreas
22
embryo
12
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
Project
618
AMP
2
T1D
Genome assembly (visualization)
478
hg19
418
GRCh38
Lab
560
AMP-T2D consortium
37
Kyle Gaulton, UCSD
23
Bing Ren, UCSD
Audit category:
33
inconsistent ontology term
1
inconsistent control
Audit category:
14
missing controlled_by
Audit category:
37
inconsistent control read length
8
inconsistent control run_type
assay_title!
MPRA
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
620 results
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Clear Filters
ChIP-seq
STARR-seq
cell line
HepG2
378
2
GM12878
60
EndoC_BH1
15
Panc1
13
smooth muscle cell of the coronary artery
6
+ See 6 more…
in vitro differentiated cells
embryonic stem cell
40
neural progenitor cell
21
pancreatic endoderm
18
hepatocyte
15
definitive endodermal cell
8
+ See 7 more…
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