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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
41
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
41
DNA binding
6
DNA methylation
Target of assay
32
histone
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
24
August, 2017
23
October, 2018
Available data
39
fastq
38
bam
19
bigWig
5
bed narrowPeak
5
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign
Organism
47
Homo sapiens
Biosample type
47
tissue
Organ
454
liver
118
pancreas
epithelium
81
connective tissue
59
blood
59
bodily fluid
47
adipose tissue
45
heart
33
vasculature
31
blood vessel
31
brain
22
kidney
18
limb
16
spleen
14
artery
11
nerve
10
embryo
7
musculature of body
2
eye
2
vein
Project
47
AMP
Genome assembly (visualization)
19
GRCh38
17
hg19
Lab
47
AMP-T2D consortium
Audit category:
12
missing controlled_by
organ_slims!
epithelium
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
WGBS
tissue
subcutaneous adipose tissue
12
white adipose tissue
12
omental fat pad
11
subcutaneous abdominal adipose tissue
5
3
adipose tissue
1
3
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