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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
30
total RNA-seq
20
ATAC-seq
4
Hi-C
4
WGBS
3
pCHi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
42
DNA binding
Target of assay
23
histone
23
histone modification
13
broad histone mark
12
transcription factor
10
narrow histone mark
7
control
1
RNA binding protein
Date released
23
August, 2017
18
August, 2021
1
February, 2021
1
March, 2020
1
May, 2020
1
November, 2017
Available data
bam
452
fastq
432
bigWig
413
bed narrowPeak
352
bigBed narrowPeak
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
7
bed bed3+
3
tar
2
tsv
Organism
45
Homo sapiens
Biosample type
24
tissue
21
cell line
Organ
55
connective tissue
45
liver
44
heart
38
adipose tissue
24
brain
23
musculature of body
21
pancreas
6
eye
5
gonad
5
ovary
2
intestine
2
kidney
2
thymus
1
adrenal gland
1
blood vessel
1
bone element
1
bone marrow
1
esophagus
1
large intestine
1
limb
1
lung
1
lymph node
1
mammary gland
small intestine
1
spleen
1
stomach
1
urinary bladder
1
vasculature
Project
45
AMP
Genome assembly (visualization)
15
hg19
Lab
27
AMP-T2D consortium
18
Bing Ren, UCSD
files.file_type!
bam
organ_slims!
small intestine
BIOSAMPLE
ASSAY
45 results
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Clear Filters
ChIP-seq
pCHi-C
tissue
liver
23
1
cell line
HepG2
19
2
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